Variant report

Variant	rs2590829
Chromosome Location	chr4:54590029-54590030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1551880	0.90[ASN][1000 genomes]
rs1871028	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1993838	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2590775	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2590786	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2590827	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2616390	0.92[ASN][1000 genomes]
rs2616398	0.94[ASN][1000 genomes]
rs2616405	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2616411	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2616412	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2668537	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2668539	0.92[ASN][1000 genomes]
rs2668540	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2590829	SPINK2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54584000-54600000	Weak transcription	Osteobl	bone
2	chr4:54590000-54591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links