Variant report

Variant	rs1871028
Chromosome Location	chr4:54576884-54576885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1551880	0.98[ASN][1000 genomes]
rs1993838	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590775	0.87[ASN][1000 genomes]
rs2590786	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590827	0.95[ASN][1000 genomes]
rs2590829	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2616390	0.83[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2616398	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2616405	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2616411	0.87[ASN][1000 genomes]
rs2616412	0.87[ASN][1000 genomes]
rs2668537	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2668539	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2668540	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
2	chr4:54569600-54580200	Weak transcription	HSMM	muscle
3	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:54569800-54577800	Weak transcription	Right Atrium	heart
5	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:54570200-54577800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:54572200-54577200	Weak transcription	Lung	lung
8	chr4:54572600-54577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:54572800-54578600	Weak transcription	Adipose Nuclei	Adipose
10	chr4:54573000-54577600	Weak transcription	Osteobl	bone
11	chr4:54573000-54577800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:54573200-54577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:54573200-54577600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:54573200-54577600	Weak transcription	Ovary	ovary
15	chr4:54573200-54577800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:54573200-54577800	Weak transcription	Pancreas	Pancrea
17	chr4:54573200-54577800	Weak transcription	Spleen	Spleen
18	chr4:54573200-54577800	Weak transcription	NHDF-Ad	bronchial
19	chr4:54573200-54580200	Weak transcription	NHLF	lung
20	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:54573800-54578000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:54576000-54577400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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