Variant report

Variant	rs2616398
Chromosome Location	chr4:54581890-54581891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1551880	0.96[ASN][1000 genomes]
rs1871028	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1993838	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590775	0.89[ASN][1000 genomes]
rs2590786	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590827	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2590829	0.94[ASN][1000 genomes]
rs2616390	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2616405	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2616411	0.89[ASN][1000 genomes]
rs2616412	0.89[ASN][1000 genomes]
rs2668537	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2668539	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2668540	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:54577600-54584000	Enhancers	Osteobl	bone
3	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:54578400-54582800	Weak transcription	Fetal Stomach	stomach
5	chr4:54578800-54583400	Weak transcription	Aorta	Aorta
6	chr4:54579000-54583000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:54579800-54583400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:54580200-54583200	Enhancers	HSMM	muscle
9	chr4:54580200-54583800	Enhancers	NHLF	lung
10	chr4:54580400-54583600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:54580400-54583800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:54580400-54583800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:54580800-54583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:54581000-54582000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:54581200-54582000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:54581400-54582200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:54581400-54582800	Flanking Active TSS	NHDF-Ad	bronchial
18	chr4:54581400-54583800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:54581600-54582800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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