Variant report

Variant	rs2590766
Chromosome Location	chr4:54617631-54617632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11133286	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11133288	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12645847	0.85[ASN][1000 genomes]
rs12646885	0.85[EUR][1000 genomes]
rs2590764	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2590765	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590791	0.81[CHB][hapmap]
rs2616391	0.81[CHB][hapmap]
rs2616432	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3866377	0.81[ASN][1000 genomes]
rs55705508	0.86[ASN][1000 genomes]
rs56061807	0.80[EUR][1000 genomes]
rs67780867	0.83[EUR][1000 genomes]
rs6829218	0.86[ASN][1000 genomes]
rs715155	0.81[CHB][hapmap]
rs7685379	0.81[ASN][1000 genomes]
rs7686165	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54616000-54617800	Weak transcription	GM12878-XiMat	blood
2	chr4:54616000-54618000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:54616800-54618400	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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