Variant report

Variant	rs6829218
Chromosome Location	chr4:54616453-54616454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11133286	0.94[ASN][1000 genomes]
rs11133288	0.94[ASN][1000 genomes]
rs11726943	0.92[ASN][1000 genomes]
rs12645847	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590764	0.86[ASN][1000 genomes]
rs2590765	0.86[ASN][1000 genomes]
rs2590766	0.86[ASN][1000 genomes]
rs2616432	0.86[ASN][1000 genomes]
rs4305579	0.91[ASN][1000 genomes]
rs55705508	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851383	0.93[ASN][1000 genomes]
rs6854881	0.82[AFR][1000 genomes]
rs7699690	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs872968	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54616000-54617800	Weak transcription	GM12878-XiMat	blood
2	chr4:54616000-54618000	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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