Variant report

Variant	rs7686165
Chromosome Location	chr4:54611619-54611620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10014722	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2590764	0.80[ASN][1000 genomes]
rs2590765	0.81[ASN][1000 genomes]
rs2590766	0.81[ASN][1000 genomes]
rs2590791	0.87[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap]
rs2616391	0.87[CHB][hapmap]
rs2616432	0.81[ASN][1000 genomes]
rs3866377	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3915415	0.82[EUR][1000 genomes]
rs3947804	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs715155	0.87[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap]
rs7685379	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7686165	PDCL2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54611200-54612200	Weak transcription	Fetal Brain Male	brain
2	chr4:54611600-54612000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr4:54611600-54612800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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