Variant report

Variant	rs10014722
Chromosome Location	chr4:54588017-54588018
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17083333	0.97[ASN][1000 genomes]
rs2590791	0.82[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap]
rs2616391	0.82[CHB][hapmap]
rs3866377	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3915415	0.89[EUR][1000 genomes]
rs3947804	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs715155	0.82[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap]
rs7685379	0.82[ASN][1000 genomes]
rs7686165	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs10014722	C3	trans	brain	seeQTL
rs10014722	PPAT	cis	cerebellum	SCAN
rs10014722	SLC2A5	trans	brain	seeQTL
rs10014722	TLR2	trans	brain	seeQTL
rs10014722	C1QC	trans	brain	seeQTL
rs10014722	CD14	trans	brain	seeQTL
rs10014722	RHBDF2	trans	brain	seeQTL
rs10014722	SLC2A5	trans	multi-tissue	Pritchard
rs10014722	FCER1G	trans	brain	seeQTL
rs10014722	WAS	trans	brain	seeQTL
rs10014722	SLC1A5	trans	brain	seeQTL
rs10014722	HCLS1	trans	brain	seeQTL
rs10014722	ALOX5AP	trans	brain	seeQTL
rs10014722	IFI30	trans	brain	seeQTL
rs10014722	FPR1	trans	brain	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54584000-54600000	Weak transcription	Osteobl	bone
2	chr4:54587400-54588200	Enhancers	HSMM	muscle
3	chr4:54587400-54588600	Enhancers	NHDF-Ad	bronchial
4	chr4:54587600-54588400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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