Variant report

Variant	rs150110
Chromosome Location	chr6:167511766-167511767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167508063..167510526-chr6:167511244..167513696,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1012656	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1012657	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10946211	0.89[ASN][1000 genomes]
rs1331301	0.87[ASN][1000 genomes]
rs150108	0.99[ASN][1000 genomes]
rs1556413	1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs162289	0.86[CHB][hapmap]
rs162291	0.86[CHB][hapmap]
rs162293	0.86[CHB][hapmap]
rs162294	0.86[CHB][hapmap]
rs162295	0.81[CHB][hapmap]
rs162297	0.82[CHB][hapmap]
rs2023305	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs55802221	0.88[ASN][1000 genomes]
rs62436797	0.86[ASN][1000 genomes]
rs6911766	0.96[ASN][1000 genomes]
rs7749827	0.89[ASN][1000 genomes]
rs9364891	0.89[ASN][1000 genomes]
rs9366076	0.82[CHB][hapmap]
rs968333	0.80[ASN][1000 genomes]
rs975822	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
6	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
8	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv7997	chr6:167508594-167512568	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs150110	CCR6	cis	parietal	SCAN
rs150110	CCR6	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167503600-167527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:167505800-167511800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:167508000-167512400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:167508200-167512200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:167508200-167512200	Weak transcription	Right Atrium	heart
6	chr6:167508400-167512200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:167508600-167512600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:167508600-167515200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:167509000-167512200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:167509000-167516400	Enhancers	Primary B cells from cord blood	blood
11	chr6:167509000-167525200	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:167509200-167511800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:167509200-167512000	Weak transcription	Primary T cells from cord blood	blood
14	chr6:167509200-167512200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:167509200-167512600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:167509400-167512200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:167509400-167512200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:167509400-167516000	Weak transcription	Stomach Mucosa	stomach
19	chr6:167509600-167512200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:167509600-167512200	Weak transcription	Fetal Thymus	thymus
21	chr6:167509800-167511800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:167509800-167511800	Weak transcription	Spleen	Spleen
23	chr6:167509800-167512200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:167509800-167512200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:167509800-167512400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:167509800-167513400	Enhancers	GM12878-XiMat	blood
27	chr6:167509800-167516200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:167510000-167511800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:167510000-167511800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:167510000-167516600	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:167511200-167517400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:167511400-167512000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:167511400-167512200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:167511400-167513200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:167511600-167512000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:167511600-167513200	Enhancers	Primary T cells fromperipheralblood	blood

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