Variant report

Variant	rs150115
Chromosome Location	chr6:167507658-167507659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11754776	0.83[EUR][1000 genomes]
rs11758496	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs11965188	0.89[EUR][1000 genomes]
rs12175077	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs149887	1.00[EUR][1000 genomes]
rs150111	1.00[EUR][1000 genomes]
rs150113	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2093415	0.85[CEU][hapmap]
rs4709142	0.89[EUR][1000 genomes]
rs4709143	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4710155	0.83[EUR][1000 genomes]
rs4710180	0.92[EUR][1000 genomes]
rs743911	0.89[EUR][1000 genomes]
rs86757	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9347171	0.92[EUR][1000 genomes]
rs9348223	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9366079	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs9366081	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs9366082	0.83[EUR][1000 genomes]
rs9366090	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
6	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
8	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167503200-167508000	Weak transcription	Gastric	stomach
2	chr6:167503200-167509800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:167503600-167527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:167504600-167508000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:167505200-167509800	Flanking Active TSS	GM12878-XiMat	blood
6	chr6:167505600-167509000	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr6:167505800-167511800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:167506000-167508000	Bivalent Enhancer	Fetal Thymus	thymus
9	chr6:167506000-167508200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr6:167506000-167508600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:167506000-167509000	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr6:167506200-167508200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:167506200-167509800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:167506400-167508000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr6:167506400-167508200	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr6:167506400-167508200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr6:167506400-167508400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr6:167506600-167508000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr6:167506600-167508200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr6:167506800-167507800	Active TSS	Colonic Mucosa	Colon
21	chr6:167506800-167507800	Bivalent Enhancer	Thymus	Thymus
22	chr6:167506800-167508000	Enhancers	Placenta	Placenta
23	chr6:167506800-167508200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:167506800-167509800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:167507000-167508600	Enhancers	Fetal Muscle Leg	muscle
26	chr6:167507000-167509800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:167507200-167507800	Active TSS	Duodenum Mucosa	Duodenum
28	chr6:167507200-167508000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:167507200-167508200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:167507200-167508400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr6:167507200-167509000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:167507200-167509800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:167507400-167507800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:167507400-167507800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:167507400-167507800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr6:167507400-167507800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr6:167507400-167507800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:167507400-167507800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:167507400-167507800	Active TSS	Left Ventricle	heart
40	chr6:167507400-167507800	Active TSS	Psoas Muscle	Psoas
41	chr6:167507400-167507800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
42	chr6:167507400-167508000	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr6:167507400-167508000	Flanking Active TSS	Fetal Muscle Trunk	muscle
44	chr6:167507400-167508000	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr6:167507400-167508000	Enhancers	Right Ventricle	heart
46	chr6:167507400-167508000	Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:167507400-167508200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr6:167507400-167508200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:167507600-167507800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:167507600-167508000	Enhancers	H1 Cell Line	embryonic stem cell

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