Variant report

Variant	rs1503543
Chromosome Location	chr4:120861124-120861125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10518345	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518347	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1558763	0.91[EUR][1000 genomes]
rs17365679	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1827541	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1827542	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1847337	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2012616	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61113786	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72912350	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73842765	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73842769	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73842773	0.91[EUR][1000 genomes]
rs7659482	0.91[EUR][1000 genomes]
rs7681971	0.89[EUR][1000 genomes]
rs7682294	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120859400-120861400	Enhancers	Osteobl	bone
2	chr4:120860200-120861200	Enhancers	Brain Substantia Nigra	brain
3	chr4:120860600-120861200	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr4:120860600-120861800	Active TSS	Fetal Heart	heart
5	chr4:120860600-120862000	Active TSS	Right Ventricle	heart
6	chr4:120860600-120863000	Active TSS	Right Atrium	heart
7	chr4:120860800-120861200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:120860800-120861200	Active TSS	Left Ventricle	heart
9	chr4:120861000-120862600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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