Variant report

Variant	rs7659482
Chromosome Location	chr4:120896023-120896024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10518345	0.87[EUR][1000 genomes]
rs10518347	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1503543	0.91[EUR][1000 genomes]
rs1558763	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365679	0.89[EUR][1000 genomes]
rs1827541	0.87[EUR][1000 genomes]
rs1827542	0.83[EUR][1000 genomes]
rs1847337	0.87[EUR][1000 genomes]
rs2012616	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61113786	0.87[EUR][1000 genomes]
rs72912350	0.89[EUR][1000 genomes]
rs73842765	0.87[EUR][1000 genomes]
rs73842769	0.87[EUR][1000 genomes]
rs73842773	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681971	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682294	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120883400-120903400	Weak transcription	Left Ventricle	heart
2	chr4:120893600-120897000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:120893600-120898200	Weak transcription	Fetal Kidney	kidney
4	chr4:120893800-120897600	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links