Variant report

Variant	rs17365679
Chromosome Location	chr4:120817743-120817744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10518345	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518347	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1503543	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1558763	0.89[EUR][1000 genomes]
rs17364898	0.91[AFR][1000 genomes]
rs1827541	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827542	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847337	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012616	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61113786	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73842765	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73842769	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73842773	0.89[EUR][1000 genomes]
rs7659482	0.89[EUR][1000 genomes]
rs7681971	0.87[EUR][1000 genomes]
rs7682294	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120815800-120818400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:120816600-120818200	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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