Variant report

Variant	rs1504638
Chromosome Location	chr8:122153568-122153569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122152636..122154917-chr8:122156415..122158032,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10100190	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10101113	0.94[ASN][1000 genomes]
rs10109367	0.95[ASN][1000 genomes]
rs10109502	0.89[ASN][1000 genomes]
rs10109711	0.98[ASN][1000 genomes]
rs10110256	0.83[AFR][1000 genomes]
rs10956005	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11997916	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12547780	0.94[ASN][1000 genomes]
rs12681217	0.92[ASN][1000 genomes]
rs12681237	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12682637	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13252222	0.96[ASN][1000 genomes]
rs13262055	0.96[ASN][1000 genomes]
rs1368594	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1368595	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1368605	0.93[ASN][1000 genomes]
rs1433392	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1821323	0.94[ASN][1000 genomes]
rs1836070	0.92[ASN][1000 genomes]
rs2019363	0.84[EUR][1000 genomes]
rs2082534	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2134932	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2134933	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2202382	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2202383	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2386265	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2386266	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28738104	0.92[ASN][1000 genomes]
rs2891977	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34173371	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35517836	0.94[ASN][1000 genomes]
rs35627384	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4145811	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4282580	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4424262	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4560798	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4610754	0.99[ASN][1000 genomes]
rs4870759	0.95[ASN][1000 genomes]
rs4870760	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4870761	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4871163	0.97[ASN][1000 genomes]
rs4871164	0.99[ASN][1000 genomes]
rs4871165	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871166	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871167	0.93[ASN][1000 genomes]
rs4871169	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61074667	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6469994	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67731008	0.83[EUR][1000 genomes]
rs6997513	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7016750	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7016899	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017023	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017048	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7357563	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122152200-122155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:122153200-122154800	Weak transcription	HSMM	muscle
3	chr8:122153200-122158600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links