Variant report

Variant	rs61074667
Chromosome Location	chr8:122149501-122149502
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122148307..122150267-chr8:122162331..122164010,2	MCF-7	breast:
2	chr8:122145319..122150737-chr8:122156091..122160331,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTBP-2	chr8:122149259-122150049	NONHSAT128459

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10100190	0.97[ASN][1000 genomes]
rs10101113	0.98[ASN][1000 genomes]
rs10109367	0.99[ASN][1000 genomes]
rs10109502	0.93[ASN][1000 genomes]
rs10109711	0.96[ASN][1000 genomes]
rs10956005	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11997916	0.98[ASN][1000 genomes]
rs12547780	0.97[ASN][1000 genomes]
rs12681217	0.97[ASN][1000 genomes]
rs12681237	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12682637	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13252222	1.00[ASN][1000 genomes]
rs13262055	1.00[ASN][1000 genomes]
rs1368594	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1368595	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368605	0.97[ASN][1000 genomes]
rs1433392	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1504638	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1821323	0.98[ASN][1000 genomes]
rs1836070	0.97[ASN][1000 genomes]
rs2019363	0.84[EUR][1000 genomes]
rs2082534	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2134932	0.97[ASN][1000 genomes]
rs2134933	0.97[ASN][1000 genomes]
rs2202382	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2202383	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2386265	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2386266	0.99[ASN][1000 genomes]
rs28738104	0.97[ASN][1000 genomes]
rs2891977	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34173371	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35517836	0.98[ASN][1000 genomes]
rs35627384	0.92[ASN][1000 genomes]
rs4145811	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4282580	0.97[ASN][1000 genomes]
rs4424262	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560798	0.96[ASN][1000 genomes]
rs4610754	0.97[ASN][1000 genomes]
rs4870759	0.99[ASN][1000 genomes]
rs4870760	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870761	0.98[ASN][1000 genomes]
rs4871163	0.95[ASN][1000 genomes]
rs4871164	0.97[ASN][1000 genomes]
rs4871165	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871166	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4871167	0.97[ASN][1000 genomes]
rs4871169	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6469994	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67731008	0.83[EUR][1000 genomes]
rs6997513	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016750	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016899	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017023	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7017048	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7357563	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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