Variant report

Variant	rs7357563
Chromosome Location	chr8:122159211-122159212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:122145319..122150737-chr8:122156091..122160331,6	MCF-7	breast:
2	chr8:122156906..122159303-chr8:122187550..122190679,3	MCF-7	breast:
3	chr8:122157710..122159249-chr8:122176897..122178644,2	MCF-7	breast:
4	chr8:122109979..122111922-chr8:122159196..122161835,2	MCF-7	breast:
5	chr8:122002107..122004466-chr8:122157622..122160064,2	MCF-7	breast:
6	chr5:177571121..177572812-chr8:122157856..122160060,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10100190	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10101113	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10109367	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10109502	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10109711	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10110256	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10956005	0.97[ASN][1000 genomes]
rs11997916	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12547780	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12681217	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12681237	0.97[ASN][1000 genomes]
rs12682637	0.97[ASN][1000 genomes]
rs13252222	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262055	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368594	0.98[ASN][1000 genomes]
rs1368595	1.00[ASN][1000 genomes]
rs1368605	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433392	0.99[ASN][1000 genomes]
rs1504638	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1821323	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1836070	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082534	0.99[ASN][1000 genomes]
rs2134932	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2134933	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2202382	0.99[ASN][1000 genomes]
rs2202383	0.99[ASN][1000 genomes]
rs2386265	0.99[ASN][1000 genomes]
rs2386266	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28738104	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2891977	0.97[ASN][1000 genomes]
rs34173371	0.97[ASN][1000 genomes]
rs35517836	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35627384	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4145811	0.97[ASN][1000 genomes]
rs4282580	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4424262	1.00[ASN][1000 genomes]
rs4560798	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4610754	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4870759	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870760	0.99[ASN][1000 genomes]
rs4870761	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871163	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871164	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871165	0.97[ASN][1000 genomes]
rs4871166	0.99[ASN][1000 genomes]
rs4871167	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871169	0.96[ASN][1000 genomes]
rs61074667	1.00[ASN][1000 genomes]
rs6469994	0.97[ASN][1000 genomes]
rs6997513	0.97[ASN][1000 genomes]
rs7016750	0.97[ASN][1000 genomes]
rs7016899	0.97[ASN][1000 genomes]
rs7017023	0.97[ASN][1000 genomes]
rs7017048	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122157000-122160200	Enhancers	HMEC	breast
2	chr8:122157400-122160200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:122157400-122160400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:122157600-122159600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:122157600-122160200	Enhancers	Fetal Muscle Leg	muscle
6	chr8:122158000-122159400	Weak transcription	Fetal Kidney	kidney
7	chr8:122158000-122159400	Weak transcription	NHLF	lung
8	chr8:122158000-122160000	Enhancers	HSMM	muscle
9	chr8:122158200-122159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:122158200-122159400	Weak transcription	NHDF-Ad	bronchial
11	chr8:122158200-122159800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:122158200-122169800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:122158400-122165800	Weak transcription	A549	lung
14	chr8:122158600-122159400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:122158600-122160400	Enhancers	Fetal Stomach	stomach
16	chr8:122158600-122161400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:122158600-122165200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:122158800-122163000	Weak transcription	Hela-S3	cervix
19	chr8:122159000-122159800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:122159000-122160800	Enhancers	Primary hematopoietic stem cells	blood
21	chr8:122159200-122160200	Enhancers	Fetal Lung	lung
22	chr8:122159200-122163200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links