Variant report

Variant	rs150574574
Chromosome Location	chr6:36952495-36952496
allele	-/CTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36930754..36936310-chr6:36950773..36956274,7	MCF-7	breast:
2	chr6:36952074..36956895-chr6:36967839..36978010,11	MCF-7	breast:
3	chr6:36952261..36954341-chr6:37137585..37140214,3	K562	blood:
4	chr6:36911927..36913902-chr6:36952339..36954357,2	MCF-7	breast:
5	chr6:36561584..36563964-chr6:36951421..36953213,2	MCF-7	breast:
6	chr6:36950922..36953739-chr6:37176914..37178749,2	MCF-7	breast:
7	chr6:36951113..36952947-chr6:36995288..36997269,2	K562	blood:
8	chr6:36852278..36855515-chr6:36952430..36957026,4	MCF-7	breast:
9	chr6:36934908..36939247-chr6:36952489..36955593,6	MCF-7	breast:
10	chr6:36952431..36954730-chr6:36980411..36983158,3	MCF-7	breast:
11	chr6:36646638..36649501-chr6:36950264..36953112,2	MCF-7	breast:
12	chr6:36838369..36843263-chr6:36951921..36955568,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction
ENSG00000137193	Chromatin interaction
ENSG00000198663	Chromatin interaction
ENSG00000146192	Chromatin interaction
ENSG00000137409	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000232598	Chromatin interaction
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv5263	chr6:36941625-36972109	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv602952	chr6:36951210-36978745	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv19906	chr6:36951876-36955062	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36950400-36952600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:36950400-36952600	Enhancers	Stomach Mucosa	stomach
3	chr6:36950600-36952600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:36950800-36952600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:36950800-36952600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:36950800-36952600	Enhancers	Spleen	Spleen
7	chr6:36951000-36952600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:36951000-36952600	Enhancers	Small Intestine	intestine
9	chr6:36951000-36952800	Flanking Active TSS	HUVEC	blood vessel
10	chr6:36951200-36952600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr6:36951200-36952600	Transcr. at gene 5' and 3'	Dnd41	blood
12	chr6:36951200-36952800	Flanking Active TSS	Right Ventricle	heart
13	chr6:36951400-36952600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:36951400-36952600	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:36951400-36952600	Flanking Active TSS	NHLF	lung
16	chr6:36951400-36953400	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr6:36951600-36952600	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr6:36951600-36952800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
19	chr6:36951600-36953000	Flanking Active TSS	Hela-S3	cervix
20	chr6:36951600-36953400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:36951800-36952600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:36951800-36952600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:36951800-36952600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:36951800-36952600	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:36951800-36952600	Enhancers	Placenta	Placenta
26	chr6:36951800-36952600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr6:36951800-36952800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:36951800-36952800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:36951800-36952800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:36951800-36952800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:36951800-36952800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:36951800-36952800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:36951800-36952800	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr6:36951800-36952800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr6:36951800-36952800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:36951800-36952800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr6:36951800-36952800	Flanking Active TSS	Fetal Heart	heart
38	chr6:36951800-36952800	Flanking Active TSS	NH-A	brain
39	chr6:36951800-36952800	Flanking Active TSS	Osteobl	bone
40	chr6:36951800-36953000	Flanking Active TSS	Brain Angular Gyrus	brain
41	chr6:36951800-36953000	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr6:36951800-36953200	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr6:36951800-36953200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr6:36951800-36953400	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr6:36951800-36953400	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr6:36951800-36953400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:36952000-36952600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:36952000-36952600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
49	chr6:36952000-36952600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr6:36952000-36952600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links