Variant report
| Variant | rs1506111 |
|---|---|
| Chromosome Location | chr5:8239450-8239451 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10035204 | 0.97[ASN][1000 genomes] |
| rs10037687 | 0.97[ASN][1000 genomes] |
| rs10038291 | 0.97[ASN][1000 genomes] |
| rs10038296 | 0.97[ASN][1000 genomes] |
| rs11134296 | 0.97[ASN][1000 genomes] |
| rs11134297 | 0.97[ASN][1000 genomes] |
| rs11134298 | 0.97[ASN][1000 genomes] |
| rs11738766 | 0.97[ASN][1000 genomes] |
| rs11738802 | 0.91[ASN][1000 genomes] |
| rs13162370 | 0.90[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13170406 | 0.97[ASN][1000 genomes] |
| rs13171325 | 0.97[ASN][1000 genomes] |
| rs13186105 | 0.98[ASN][1000 genomes] |
| rs1506110 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1506112 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1857862 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1857863 | 0.97[EUR][1000 genomes] |
| rs2087291 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6883860 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6888264 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533983 | chr5:7701457-8275379 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024542 | chr5:8138412-8299908 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:8239200-8240200 | Bivalent Enhancer | Foreskin Melanocyte Primary Cells skin03 | Skin |
