Variant report

Variant	rs1857863
Chromosome Location	chr5:8240153-8240154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10462854	0.82[ASN][1000 genomes]
rs10475413	0.81[ASN][1000 genomes]
rs10512948	0.82[ASN][1000 genomes]
rs11134295	0.98[ASN][1000 genomes]
rs12233945	0.82[ASN][1000 genomes]
rs1506110	0.97[EUR][1000 genomes]
rs1506111	0.97[EUR][1000 genomes]
rs1506112	0.94[EUR][1000 genomes]
rs16880169	0.82[ASN][1000 genomes]
rs16880188	0.82[ASN][1000 genomes]
rs1857862	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2087291	0.94[EUR][1000 genomes]
rs66745176	0.81[ASN][1000 genomes]
rs68100125	0.82[ASN][1000 genomes]
rs6867552	0.98[ASN][1000 genomes]
rs6882328	0.98[ASN][1000 genomes]
rs6883860	0.92[EUR][1000 genomes]
rs6888264	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024542	chr5:8138412-8299908	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8239200-8240200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:8240000-8240400	Enhancers	Fetal Muscle Leg	muscle
3	chr5:8240000-8240600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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