Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10035204	0.98[ASN][1000 genomes]
rs10037687	0.98[ASN][1000 genomes]
rs10038291	0.98[ASN][1000 genomes]
rs10038296	0.98[ASN][1000 genomes]
rs11134296	0.98[ASN][1000 genomes]
rs11134297	0.98[ASN][1000 genomes]
rs11134298	0.98[ASN][1000 genomes]
rs11738766	0.98[ASN][1000 genomes]
rs11738802	0.93[ASN][1000 genomes]
rs13162370	0.99[ASN][1000 genomes]
rs13170406	0.98[ASN][1000 genomes]
rs13171325	0.98[ASN][1000 genomes]
rs13186105	0.99[ASN][1000 genomes]
rs1506110	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506111	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1506112	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1857862	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1857863	0.92[EUR][1000 genomes]
rs2087291	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6888264	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024542	chr5:8138412-8299908	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8233000-8233800	Enhancers	Fetal Kidney	kidney

Quick Search: