Variant report

Variant	rs1506469
Chromosome Location	chr3:161276576-161276577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160991137..160993138-chr3:161275406..161276943,2	MCF-7	breast:
2	chr3:161125406..161127626-chr3:161276162..161278825,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1515740	1.00[AMR][1000 genomes]
rs56343068	1.00[AMR][1000 genomes]
rs57595794	1.00[AMR][1000 genomes]
rs58379118	1.00[AMR][1000 genomes]
rs58467439	1.00[AMR][1000 genomes]
rs60394340	1.00[AMR][1000 genomes]
rs73875657	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877420	1.00[AMR][1000 genomes]
rs73877422	1.00[AMR][1000 genomes]
rs73877425	1.00[AMR][1000 genomes]
rs73877430	1.00[AMR][1000 genomes]
rs73877431	1.00[AMR][1000 genomes]
rs73877434	1.00[AMR][1000 genomes]
rs73877435	1.00[AMR][1000 genomes]
rs73877437	1.00[AMR][1000 genomes]
rs73877438	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161269200-161276800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:161272200-161276800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:161272800-161279600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:161275200-161277800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:161275600-161276600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:161275600-161276600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:161275600-161276600	Flanking Active TSS	Dnd41	blood
8	chr3:161275800-161276600	Enhancers	Fetal Heart	heart
9	chr3:161275800-161277800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:161275800-161277800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:161275800-161277800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:161275800-161278200	Enhancers	NH-A	brain
13	chr3:161276000-161277000	Enhancers	HMEC	breast
14	chr3:161276000-161277800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:161276000-161277800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:161276200-161276600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:161276200-161277600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:161276400-161276600	Enhancers	Fetal Lung	lung
19	chr3:161276400-161277600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:161276400-161277800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:161276400-161277800	Weak transcription	Fetal Brain Female	brain
22	chr3:161276400-161277800	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:161276400-161277800	Weak transcription	Fetal Stomach	stomach
24	chr3:161276400-161278000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr3:161276400-161278000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links