Variant report
| Variant | rs73875657 |
|---|---|
| Chromosome Location | chr3:161259016-161259017 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161258952..161261503-chr3:161267723..161269425,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1506469 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1515740 | 1.00[AMR][1000 genomes] |
| rs56343068 | 1.00[AMR][1000 genomes] |
| rs57595794 | 1.00[AMR][1000 genomes] |
| rs58379118 | 1.00[AMR][1000 genomes] |
| rs58467439 | 1.00[AMR][1000 genomes] |
| rs60394340 | 1.00[AMR][1000 genomes] |
| rs73875642 | 0.86[AFR][1000 genomes] |
| rs73875665 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73877420 | 1.00[AMR][1000 genomes] |
| rs73877422 | 1.00[AMR][1000 genomes] |
| rs73877425 | 1.00[AMR][1000 genomes] |
| rs73877430 | 1.00[AMR][1000 genomes] |
| rs73877431 | 1.00[AMR][1000 genomes] |
| rs73877434 | 1.00[AMR][1000 genomes] |
| rs73877435 | 1.00[AMR][1000 genomes] |
| rs73877437 | 1.00[AMR][1000 genomes] |
| rs73877438 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161258600-161259200 | Enhancers | Dnd41 | blood |
