Variant report

Variant	rs58379118
Chromosome Location	chr3:161358621-161358622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1506469	1.00[AMR][1000 genomes]
rs1515740	1.00[AMR][1000 genomes]
rs56343068	1.00[AMR][1000 genomes]
rs57595794	1.00[AMR][1000 genomes]
rs58467439	1.00[AMR][1000 genomes]
rs60394340	1.00[AMR][1000 genomes]
rs73875657	1.00[AMR][1000 genomes]
rs73875665	1.00[AMR][1000 genomes]
rs73877420	1.00[AMR][1000 genomes]
rs73877422	1.00[AMR][1000 genomes]
rs73877425	1.00[AMR][1000 genomes]
rs73877430	1.00[AMR][1000 genomes]
rs73877431	1.00[AMR][1000 genomes]
rs73877434	1.00[AMR][1000 genomes]
rs73877435	1.00[AMR][1000 genomes]
rs73877437	1.00[AMR][1000 genomes]
rs73877438	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2754526	chr3:161353644-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1012553	chr3:161354221-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161353200-161359200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:161355800-161359000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:161356000-161362800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:161356600-161360800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:161358400-161358800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:161358400-161361800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:161358600-161359000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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