Variant report

Variant	rs1506907
Chromosome Location	chr16:31890275-31890276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11150650	0.94[AFR][1000 genomes]
rs12919368	1.00[CEU][hapmap]
rs1857943	0.90[AFR][1000 genomes]
rs2358778	1.00[CEU][hapmap]
rs3843960	1.00[CEU][hapmap]
rs3850114	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs3861268	1.00[CEU][hapmap]
rs3861270	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs3913870	1.00[CEU][hapmap]
rs3913871	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs4026652	1.00[CEU][hapmap]
rs4026654	1.00[CEU][hapmap]
rs4889517	1.00[CEU][hapmap]
rs4889518	1.00[CEU][hapmap]
rs4889563	1.00[CEU][hapmap]
rs4889565	1.00[CEU][hapmap]
rs4889567	0.98[AFR][1000 genomes]
rs4889568	1.00[CEU][hapmap];0.94[AFR][1000 genomes]
rs4889569	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6565291	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7197804	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7200162	1.00[CEU][hapmap]
rs7202831	0.94[AFR][1000 genomes]
rs7203345	1.00[CEU][hapmap]
rs8048908	1.00[CEU][hapmap]
rs8056158	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs8059500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs8060276	0.94[AFR][1000 genomes]
rs8062514	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9788838	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9928574	0.93[AFR][1000 genomes]
rs9928704	1.00[CEU][hapmap]
rs9929494	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv3446880	chr16:31734687-31891223	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31885200-31892400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr16:31886200-31891600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:31886200-31891600	Weak transcription	Ovary	ovary
4	chr16:31886600-31891600	Weak transcription	Fetal Heart	heart
5	chr16:31886600-31893800	Weak transcription	Fetal Kidney	kidney
6	chr16:31886800-31891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:31886800-31891800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr16:31886800-31894400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr16:31886800-31897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:31886800-31898200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:31886800-31901000	Weak transcription	Fetal Brain Male	brain
12	chr16:31887000-31891200	Weak transcription	Fetal Muscle Leg	muscle
13	chr16:31887000-31891800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr16:31887000-31894000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr16:31887000-31895400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:31887000-31901600	Weak transcription	Fetal Brain Female	brain
17	chr16:31887000-31902200	ZNF genes & repeats	A549	lung
18	chr16:31887200-31890800	Enhancers	HMEC	breast
19	chr16:31887200-31891400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr16:31887200-31900800	Weak transcription	Brain Germinal Matrix	brain
21	chr16:31887400-31900800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr16:31887800-31892200	Weak transcription	Psoas Muscle	Psoas
23	chr16:31887800-31892400	Genic enhancers	Primary B cells from peripheral blood	blood
24	chr16:31887800-31895800	Weak transcription	Fetal Lung	lung
25	chr16:31887800-31907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr16:31888400-31895600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr16:31888400-31895800	Weak transcription	Fetal Thymus	thymus
28	chr16:31888600-31891200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr16:31888800-31890600	Genic enhancers	K562	blood
30	chr16:31888800-31895200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr16:31889000-31892000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr16:31889000-31892000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
33	chr16:31889000-31893800	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr16:31889200-31890800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr16:31889200-31891200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr16:31889200-31892000	Genic enhancers	Primary T cells from cord blood	blood
37	chr16:31889200-31892400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:31889200-31895800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr16:31889400-31890400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr16:31889400-31891200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr16:31889400-31891400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr16:31889400-31891600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr16:31889400-31891800	Genic enhancers	Monocytes-CD14+_RO01746	blood
44	chr16:31889400-31893400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
45	chr16:31889400-31894200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr16:31889400-31895400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr16:31889400-31911600	ZNF genes & repeats	Primary B cells from cord blood	blood
48	chr16:31889600-31890400	Strong transcription	Placenta	Placenta
49	chr16:31889600-31890400	Strong transcription	Hela-S3	cervix
50	chr16:31889600-31890600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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