Variant report

Variant	rs3913870
Chromosome Location	chr16:31902209-31902210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31900905..31903577-chr16:31904504..31907027,3	K562	blood:
2	chr16:31900859..31903730-chr16:31904016..31907027,3	K562	blood:
3	chr16:31897518..31899829-chr16:31901532..31903567,2	K562	blood:

Variant related genes	Relation type
ENSG00000259950	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10871460	0.86[EUR][1000 genomes]
rs11150650	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11150651	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12444740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12599066	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12919368	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12924931	0.93[EUR][1000 genomes]
rs1506907	1.00[CEU][hapmap]
rs1827959	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1828131	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1857943	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2358778	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3843960	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3843961	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850114	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861268	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861270	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913868	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913871	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4026652	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4026653	0.81[EUR][1000 genomes]
rs4026654	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4402587	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889517	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4889518	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889563	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889565	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889568	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889569	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6565290	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6565291	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7197804	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200162	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7202831	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203345	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7205034	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8048908	1.00[CEU][hapmap]
rs8056158	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8058598	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8059500	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8060276	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8062514	1.00[CEU][hapmap]
rs9788838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921760	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928574	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928704	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31887800-31907400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:31889400-31911600	ZNF genes & repeats	Primary B cells from cord blood	blood
3	chr16:31890200-31905800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr16:31892000-31905000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr16:31892000-31910400	ZNF genes & repeats	GM12878-XiMat	blood
6	chr16:31892200-31905000	Weak transcription	Fetal Heart	heart
7	chr16:31892400-31903400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr16:31892400-31904200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:31892400-31905000	Weak transcription	Brain Substantia Nigra	brain
10	chr16:31892400-31905800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:31892800-31902600	Weak transcription	Pancreas	Pancrea
12	chr16:31892800-31905200	Weak transcription	Right Ventricle	heart
13	chr16:31892800-31906000	Weak transcription	Psoas Muscle	Psoas
14	chr16:31893000-31913200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:31893200-31911800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr16:31893400-31902800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:31893400-31911400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:31893400-31911800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr16:31893400-31912000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr16:31893600-31917800	Weak transcription	Colon Smooth Muscle	Colon
21	chr16:31893800-31903400	Strong transcription	HSMM	muscle
22	chr16:31894000-31903000	Weak transcription	Stomach Mucosa	stomach
23	chr16:31895000-31908400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr16:31895000-31909600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr16:31895200-31902400	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr16:31895800-31910200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr16:31896600-31910400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr16:31896800-31904400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr16:31897000-31904000	Weak transcription	Aorta	Aorta
30	chr16:31897600-31912000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr16:31897800-31902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr16:31898000-31902600	Weak transcription	Left Ventricle	heart
33	chr16:31898000-31902800	Weak transcription	Fetal Stomach	stomach
34	chr16:31898000-31903000	Weak transcription	Gastric	stomach
35	chr16:31898000-31903200	Weak transcription	Spleen	Spleen
36	chr16:31898000-31903400	Weak transcription	Lung	lung
37	chr16:31898000-31905000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr16:31898000-31905200	Weak transcription	Brain Angular Gyrus	brain
39	chr16:31898400-31903400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr16:31898600-31905800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr16:31898800-31902800	ZNF genes & repeats	Dnd41	blood
42	chr16:31899400-31903800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chr16:31899600-31910200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr16:31900000-31903200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
45	chr16:31900000-31908200	Strong transcription	Fetal Thymus	thymus
46	chr16:31900000-31911000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr16:31900000-31911400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr16:31900400-31908800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr16:31900600-31902400	ZNF genes & repeats	Primary T cells from cord blood	blood
50	chr16:31900600-31902400	ZNF genes & repeats	Liver	Liver

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