Variant report

Variant	rs7205034
Chromosome Location	chr16:31923949-31923950
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF720-2	chr16:31923175-31928172	ENSG00000262657.1

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10871460	0.83[EUR][1000 genomes]
rs11150650	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11150651	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12444740	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12599066	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12919368	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12924931	0.89[EUR][1000 genomes]
rs1827959	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1828131	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1857943	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2358778	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3843960	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3843961	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3850114	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3861268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3861270	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3913868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3913870	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3913871	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4026652	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4026653	0.88[AFR][1000 genomes]
rs4026654	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4402587	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889517	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889518	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889563	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4889565	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889567	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889568	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889569	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6565290	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6565291	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7197804	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7200162	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7202831	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7203345	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8056158	0.86[EUR][1000 genomes]
rs8058598	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8059500	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8060276	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9788838	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9921760	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9928574	0.92[EUR][1000 genomes]
rs9928704	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv2640928	chr16:31920888-31924919	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2375355	chr16:31921272-31924451	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3313338	chr16:31921342-31924376	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3313339	chr16:31921374-31924369	Strong transcription Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3313337	chr16:31921465-31924270	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3313340	chr16:31921479-31924269	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv11658	chr16:31921501-31924157	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31907800-31924400	Weak transcription	HSMMtube	muscle
2	chr16:31908000-31924600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:31917000-31931200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:31917000-31931600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr16:31917000-31932000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr16:31917000-31932200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
7	chr16:31917000-31932400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:31917000-31932400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr16:31917000-31934000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:31917000-31935200	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr16:31917000-31935400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr16:31917200-31930600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr16:31917200-31930800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr16:31917200-31931600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr16:31917400-31930200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:31917400-31930600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr16:31918000-31930400	ZNF genes & repeats	A549	lung
18	chr16:31918200-31924400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr16:31918200-31924400	Weak transcription	Pancreas	Pancrea
20	chr16:31918200-31924400	Weak transcription	Thymus	Thymus
21	chr16:31918400-31924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr16:31919600-31930400	ZNF genes & repeats	Dnd41	blood
23	chr16:31920400-31930400	ZNF genes & repeats	GM12878-XiMat	blood
24	chr16:31920800-31924400	Weak transcription	Esophagus	oesophagus
25	chr16:31920800-31924400	Weak transcription	Placenta	Placenta
26	chr16:31920800-31924400	Weak transcription	Gastric	stomach
27	chr16:31920800-31924400	Weak transcription	Ovary	ovary
28	chr16:31920800-31929800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
29	chr16:31921200-31924400	Weak transcription	Stomach Mucosa	stomach
30	chr16:31921200-31932400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr16:31922200-31928200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr16:31922200-31930200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr16:31922400-31929400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chr16:31922400-31931800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
35	chr16:31922400-31931800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
36	chr16:31922400-31932000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr16:31922400-31932400	ZNF genes & repeats	Liver	Liver
38	chr16:31922600-31930200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr16:31922600-31931400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr16:31922800-31924400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr16:31922800-31928000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr16:31922800-31930400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr16:31922800-31930400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr16:31922800-31932000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
45	chr16:31922800-31932000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
46	chr16:31923000-31927600	ZNF genes & repeats	NHEK	skin
47	chr16:31923000-31928000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
48	chr16:31923000-31928000	ZNF genes & repeats	Brain Anterior Caudate	brain
49	chr16:31923000-31929800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
50	chr16:31923000-31930200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood

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