Variant report

Variant	rs7202831
Chromosome Location	chr20:10911826-10911827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10871460	0.86[EUR][1000 genomes]
rs11150650	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11150651	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12444740	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12599066	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12919368	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12924931	0.93[EUR][1000 genomes]
rs1827959	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1828131	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1857943	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2358778	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3843960	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3843961	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850114	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861268	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913868	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913870	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4026652	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4026653	0.81[EUR][1000 genomes]
rs4026654	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4402587	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889517	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889518	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889563	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889565	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889567	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889568	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889569	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6565290	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6565291	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7197804	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200162	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7203345	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7205034	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8056158	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8058598	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8059500	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8060276	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9788838	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921760	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928574	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929494	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv912663	chr20:10891798-10963675	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv912664	chr20:10907037-10963675	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10901000-10920200	Weak transcription	Aorta	Aorta
2	chr20:10906800-10914800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:10909200-10916200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:10910200-10916200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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