Variant report

Variant	rs3843961
Chromosome Location	chr16:31931289-31931290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31930170..31932707-chr16:31934024..31936447,2	K562	blood:
2	chr16:31929972..31932646-chr16:31933691..31936236,4	MCF-7	breast:
3	chr16:31926933..31929361-chr16:31930312..31932712,3	K562	blood:
4	chr16:31929792..31932707-chr16:31934299..31936447,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10871460	0.86[EUR][1000 genomes]
rs11150650	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11150651	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12444740	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12599066	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12919368	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12924931	0.93[EUR][1000 genomes]
rs1506907	1.00[CEU][hapmap]
rs1827959	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1828131	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1857943	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2358778	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3843960	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850114	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3861270	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913868	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913870	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3913871	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4026652	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4026653	0.98[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4026654	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4402587	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889517	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4889518	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889563	1.00[CEU][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4889565	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889568	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4889569	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6565290	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6565291	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7185691	0.89[AFR][1000 genomes]
rs7197804	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200162	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7202831	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203345	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7205034	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8048908	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8056158	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs8058598	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8059500	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8060276	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8062514	1.00[CEU][hapmap]
rs9788838	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921760	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928574	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928704	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067321	chr16:31652036-31959992	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv918074	chr16:31669781-31935033	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1063037	chr16:31669981-31934894	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv542903	chr16:31669981-31934894	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1066522	chr16:31831196-31959992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv1057300	chr16:31862900-31959992	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31917000-31931600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
2	chr16:31917000-31932000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
3	chr16:31917000-31932200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr16:31917000-31932400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr16:31917000-31932400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:31917000-31934000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:31917000-31935200	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr16:31917000-31935400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:31917200-31931600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
10	chr16:31921200-31932400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:31922400-31931800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
12	chr16:31922400-31931800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
13	chr16:31922400-31932000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr16:31922400-31932400	ZNF genes & repeats	Liver	Liver
15	chr16:31922600-31931400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:31922800-31932000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
17	chr16:31922800-31932000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr16:31923000-31931400	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr16:31923200-31931400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
20	chr16:31923600-31931400	ZNF genes & repeats	HSMM	muscle
21	chr16:31928800-31932000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr16:31929400-31932000	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr16:31930200-31931600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr16:31930400-31933200	Weak transcription	Dnd41	blood
25	chr16:31931200-31931800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr16:31931200-31936600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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