Variant report

Variant	rs1507336
Chromosome Location	chr1:209548925-209548926
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209547762..209552825-chr1:209601391..209605097,6	MCF-7	breast:
2	chr1:209547752..209549329-chr1:209603815..209605769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1006316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1006317	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11811038	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs12135550	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1354850	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1354852	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1354853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1395753	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1507331	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17014320	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17014323	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17014337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17014370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17014375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17014395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857967	0.92[CHB][hapmap]
rs4844473	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4844807	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4844809	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4844815	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4844820	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4844821	0.98[ASN][1000 genomes]
rs55684110	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58017268	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60460414	0.95[ASN][1000 genomes]
rs60534728	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6674793	0.97[ASN][1000 genomes]
rs6681466	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74155473	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516757	0.83[ASN][1000 genomes]
rs7516864	0.92[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7548184	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209535800-209550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:209540400-209549200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:209542600-209549200	Weak transcription	A549	lung
4	chr1:209544000-209549000	Weak transcription	Fetal Lung	lung
5	chr1:209544400-209550200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:209546600-209552800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:209546800-209550600	Enhancers	NHEK	skin
8	chr1:209547200-209549400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr1:209547400-209556000	Weak transcription	Esophagus	oesophagus
10	chr1:209548000-209550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:209548400-209549600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:209548400-209549600	Enhancers	NHLF	lung
13	chr1:209548400-209550000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:209548400-209550000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:209548400-209550000	Enhancers	Hela-S3	cervix
16	chr1:209548400-209550000	Enhancers	Osteobl	bone
17	chr1:209548400-209550200	Enhancers	HMEC	breast
18	chr1:209548600-209549000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:209548600-209549000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:209548600-209549200	Enhancers	Fetal Brain Female	brain
21	chr1:209548600-209549400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr1:209548600-209549400	Enhancers	Fetal Muscle Leg	muscle
23	chr1:209548600-209549600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:209548600-209549600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:209548600-209549600	Enhancers	Fetal Kidney	kidney
26	chr1:209548600-209549800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:209548600-209549800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr1:209548600-209549800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:209548600-209549800	Enhancers	HSMM	muscle
30	chr1:209548600-209550000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr1:209548600-209550200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr1:209548600-209550200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:209548600-209550200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr1:209548800-209549000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr1:209548800-209549000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr1:209548800-209549000	Enhancers	Fetal Brain Male	brain
37	chr1:209548800-209549200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:209548800-209549400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:209548800-209549400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:209548800-209549400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr1:209548800-209549600	Enhancers	NH-A	brain
42	chr1:209548800-209549800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr1:209548800-209550000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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