Variant report

Variant	rs1395753
Chromosome Location	chr1:209490527-209490528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006316	0.91[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1006317	0.92[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes]
rs10494920	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10494921	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11811038	0.94[MEX][hapmap]
rs12096864	0.81[CEU][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs12135550	0.84[CHB][hapmap]
rs1354853	0.91[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs1507331	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1507336	0.91[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17014203	0.80[ASN][1000 genomes]
rs17014320	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17014323	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17014332	0.81[AMR][1000 genomes]
rs17014337	0.91[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17014370	0.91[CEU][hapmap];0.92[CHB][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17014375	0.91[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17014395	0.91[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17014396	0.91[CEU][hapmap];0.92[CHB][hapmap];0.81[CHD][hapmap];0.80[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1857967	0.84[CHB][hapmap];0.82[MEX][hapmap]
rs4844807	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4844809	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4844815	0.83[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55684110	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58017268	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60534728	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6680924	0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs6681466	0.91[CEU][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes]
rs74155473	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7516864	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs7548184	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1395753	C1orf97	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209490200-209492400	Enhancers	Fetal Brain Male	brain

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