Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1006316	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1006317	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11811038	1.00[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12135550	0.91[JPT][hapmap]
rs12142844	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12142846	1.00[CEU][hapmap]
rs1354851	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1354853	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1395753	0.81[AMR][1000 genomes]
rs1507336	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17014320	0.83[AMR][1000 genomes]
rs17014337	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17014370	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs17014375	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17014395	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17014396	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1857967	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4844809	0.83[AMR][1000 genomes]
rs4844815	0.82[JPT][hapmap]
rs55717527	0.84[EUR][1000 genomes]
rs56265166	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681466	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209506200-209524600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:209515800-209522800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:209515800-209524200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:209516800-209522600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:209517200-209522600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:209517600-209522600	Weak transcription	Fetal Heart	heart
7	chr1:209517800-209522200	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:209517800-209522800	Weak transcription	Rectal Smooth Muscle	rectum

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