Variant report

Variant	rs10494921
Chromosome Location	chr1:209513501-209513502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209512114..209513913-chr1:209517327..209518870,2	K562	blood:
2	chr1:209382422..209384753-chr1:209511940..209513719,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006316	0.91[CEU][hapmap];0.90[JPT][hapmap]
rs1006317	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10494920	0.84[AMR][1000 genomes]
rs11811038	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs12096864	0.82[CEU][hapmap]
rs12135550	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs12142846	0.85[CHB][hapmap]
rs1354851	0.85[CHB][hapmap]
rs1354853	0.91[CEU][hapmap];0.90[JPT][hapmap]
rs1395753	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1507331	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1507336	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs17014320	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17014323	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17014337	0.91[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17014370	0.91[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17014375	0.91[CEU][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs17014395	0.91[CEU][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes]
rs17014396	0.91[CEU][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs4844473	0.80[ASN][1000 genomes]
rs4844807	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4844809	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4844815	0.83[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4844821	0.80[ASN][1000 genomes]
rs55684110	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58017268	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60534728	0.80[EUR][1000 genomes]
rs6681466	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74155473	0.84[EUR][1000 genomes]
rs7516864	0.81[JPT][hapmap]
rs7548184	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209506200-209513600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:209506200-209515600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:209506200-209524600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:209513000-209516800	Enhancers	Fetal Lung	lung
5	chr1:209513000-209517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:209513000-209518600	Enhancers	Fetal Brain Male	brain
7	chr1:209513200-209513800	Enhancers	Fetal Heart	heart

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