Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10517204	0.83[JPT][hapmap]
rs10805163	0.83[JPT][hapmap]
rs12511511	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13107767	1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1396051	0.83[JPT][hapmap]
rs2230594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28650378	0.97[ASN][1000 genomes]
rs28667740	0.99[ASN][1000 genomes]
rs33964061	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805187	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs4340770	0.84[ASN][1000 genomes]
rs4694880	0.83[JPT][hapmap]
rs4695332	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6447610	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6447611	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6447612	0.97[ASN][1000 genomes]
rs6447613	0.97[ASN][1000 genomes]
rs6447614	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6829490	0.97[ASN][1000 genomes]
rs6839501	0.97[ASN][1000 genomes]
rs906487	0.83[ASN][1000 genomes]
rs9996535	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1507925	TXK	cis	parietal	SCAN
rs1507925	TEC	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48060000-48061800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:48060400-48060800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr4:48060400-48061200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:48060400-48061800	Enhancers	Primary T cells from cord blood	blood
5	chr4:48060600-48060800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr4:48060600-48061000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:48060600-48061000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:48060600-48061000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:48060600-48061200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr4:48060600-48061600	Weak transcription	Placenta	Placenta
11	chr4:48060600-48062000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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