Variant report

Variant	rs28667740
Chromosome Location	chr4:48060815-48060816
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12511511	0.95[ASN][1000 genomes]
rs13107767	0.83[ASN][1000 genomes]
rs1507925	0.99[ASN][1000 genomes]
rs2230594	0.97[ASN][1000 genomes]
rs28650378	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33964061	0.97[ASN][1000 genomes]
rs3805187	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4340770	0.83[ASN][1000 genomes]
rs4695332	0.82[ASN][1000 genomes]
rs6447610	0.97[ASN][1000 genomes]
rs6447611	0.97[ASN][1000 genomes]
rs6447612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6447613	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6447614	0.97[ASN][1000 genomes]
rs6829490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839501	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs906487	0.82[ASN][1000 genomes]
rs9996535	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48060000-48061800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:48060400-48061200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:48060400-48061800	Enhancers	Primary T cells from cord blood	blood
4	chr4:48060600-48061000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:48060600-48061000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr4:48060600-48061000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:48060600-48061200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:48060600-48061600	Weak transcription	Placenta	Placenta
9	chr4:48060600-48062000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:48060800-48061000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr4:48060800-48061800	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links