Variant report

Variant	rs1511319
Chromosome Location	chr14:84362817-84362818
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12588746	0.89[ASN][1000 genomes]
rs1629389	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1698259	0.83[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs1705644	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1705647	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1705648	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1705650	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1705664	0.91[ASN][1000 genomes]
rs1756277	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756278	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6574760	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431019	chr14:84303525-84365447	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84359400-84363200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:84359600-84363000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:84361400-84363000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:84361600-84363200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:84362600-84363000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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