Variant report

Variant	rs1705647
Chromosome Location	chr14:84356067-84356068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12588746	0.88[ASN][1000 genomes]
rs1511319	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1629389	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1698259	0.82[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]
rs1705644	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1705648	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1705650	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1705664	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1756277	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1756278	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6574760	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431019	chr14:84303525-84365447	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84354200-84359400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:84354200-84359600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:84354400-84362600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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