Variant report

Variant	rs1513884
Chromosome Location	chr2:177642059-177642060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1106473	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16864414	1.00[ASN][1000 genomes]
rs16864421	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16864480	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17578186	1.00[ASN][1000 genomes]
rs4635560	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894199	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66596127	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931448	1.00[ASN][1000 genomes]
rs72931451	1.00[ASN][1000 genomes]
rs72931452	1.00[ASN][1000 genomes]
rs72931457	1.00[ASN][1000 genomes]
rs72931460	1.00[ASN][1000 genomes]
rs72931461	1.00[ASN][1000 genomes]
rs72931463	1.00[ASN][1000 genomes]
rs72931465	1.00[ASN][1000 genomes]
rs72934838	1.00[ASN][1000 genomes]
rs72934842	1.00[ASN][1000 genomes]
rs72934846	1.00[ASN][1000 genomes]
rs72934850	1.00[ASN][1000 genomes]
rs72934853	1.00[ASN][1000 genomes]
rs72934864	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72934892	1.00[ASN][1000 genomes]
rs72936942	1.00[ASN][1000 genomes]
rs7577987	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7578081	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177628800-177655400	Weak transcription	Ovary	ovary
2	chr2:177634600-177643800	Weak transcription	Psoas Muscle	Psoas
3	chr2:177641800-177643000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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