Variant report

Variant	rs72934853
Chromosome Location	chr2:177634083-177634084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177632631..177635766-chr2:177643014..177646486,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1106473	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513884	1.00[ASN][1000 genomes]
rs16864414	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864421	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864480	1.00[ASN][1000 genomes]
rs17578186	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635560	1.00[ASN][1000 genomes]
rs4894199	1.00[ASN][1000 genomes]
rs66596127	1.00[ASN][1000 genomes]
rs72931448	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931451	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931452	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931457	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931460	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931461	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931463	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931465	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934838	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934842	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934846	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934850	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934864	1.00[ASN][1000 genomes]
rs72934892	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72936942	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577987	1.00[ASN][1000 genomes]
rs7578081	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177623400-177634400	Weak transcription	Right Atrium	heart
2	chr2:177628800-177655400	Weak transcription	Ovary	ovary
3	chr2:177631200-177638400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:177632800-177634600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:177633000-177634400	Enhancers	Fetal Thymus	thymus
6	chr2:177633400-177635600	Enhancers	Primary B cells from peripheral blood	blood
7	chr2:177633800-177634600	Enhancers	Psoas Muscle	Psoas
8	chr2:177634000-177634600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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