Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:177640122..177642678-chr2:177644160..177645809,2	MCF-7	breast:
2	chr2:177545219..177547793-chr2:177641996..177643563,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1106473	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1513884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864414	1.00[ASN][1000 genomes]
rs16864421	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16864480	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17578186	1.00[ASN][1000 genomes]
rs4894199	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66596127	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931448	1.00[ASN][1000 genomes]
rs72931451	1.00[ASN][1000 genomes]
rs72931452	1.00[ASN][1000 genomes]
rs72931457	1.00[ASN][1000 genomes]
rs72931460	1.00[ASN][1000 genomes]
rs72931461	1.00[ASN][1000 genomes]
rs72931463	1.00[ASN][1000 genomes]
rs72931465	1.00[ASN][1000 genomes]
rs72934838	1.00[ASN][1000 genomes]
rs72934842	1.00[ASN][1000 genomes]
rs72934846	1.00[ASN][1000 genomes]
rs72934850	1.00[ASN][1000 genomes]
rs72934853	1.00[ASN][1000 genomes]
rs72934864	1.00[ASN][1000 genomes]
rs72934892	1.00[ASN][1000 genomes]
rs72936942	1.00[ASN][1000 genomes]
rs7577987	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7578081	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177628800-177655400	Weak transcription	Ovary	ovary
2	chr2:177634600-177643800	Weak transcription	Psoas Muscle	Psoas
3	chr2:177641800-177643000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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