Variant report

Variant	rs152365
Chromosome Location	chr5:36184515-36184516
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10051604	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10079844	0.86[AFR][1000 genomes]
rs10079850	0.86[AFR][1000 genomes]
rs10080095	0.82[ASN][1000 genomes]
rs10214173	0.82[ASN][1000 genomes]
rs10223062	0.82[ASN][1000 genomes]
rs1035480	0.82[ASN][1000 genomes]
rs10473001	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10473002	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10512643	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10737962	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10805609	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10805610	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10805611	0.82[ASN][1000 genomes]
rs10805612	0.82[ASN][1000 genomes]
rs11747169	0.82[ASN][1000 genomes]
rs13360059	0.82[ASN][1000 genomes]
rs1345776	0.82[ASN][1000 genomes]
rs1363843	0.82[ASN][1000 genomes]
rs1363844	0.82[ASN][1000 genomes]
rs1364017	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1423223	0.82[ASN][1000 genomes]
rs1423226	0.82[ASN][1000 genomes]
rs152366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1816101	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1862543	0.82[ASN][1000 genomes]
rs1862544	0.82[ASN][1000 genomes]
rs2303163	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2362978	0.82[ASN][1000 genomes]
rs2362980	0.82[ASN][1000 genomes]
rs27733	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33663	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34888491	0.82[ASN][1000 genomes]
rs3761974	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3849786	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3860801	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3906394	0.86[AFR][1000 genomes]
rs41445147	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs430421	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4869473	0.82[ASN][1000 genomes]
rs4869474	0.82[ASN][1000 genomes]
rs4869626	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4869634	0.82[ASN][1000 genomes]
rs4869635	0.80[ASN][1000 genomes]
rs4869636	0.82[ASN][1000 genomes]
rs6451262	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6451263	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6451265	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6451269	0.82[ASN][1000 genomes]
rs6451270	0.82[ASN][1000 genomes]
rs6863707	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6866745	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6869599	0.82[ASN][1000 genomes]
rs6870255	0.90[ASN][1000 genomes]
rs6873176	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6874389	0.82[ASN][1000 genomes]
rs6881086	0.82[ASN][1000 genomes]
rs6886098	0.82[ASN][1000 genomes]
rs6891120	0.86[AFR][1000 genomes]
rs6892199	0.82[ASN][1000 genomes]
rs6893107	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6895423	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6898215	0.81[ASN][1000 genomes]
rs7705209	0.82[ASN][1000 genomes]
rs7705396	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7705858	0.82[ASN][1000 genomes]
rs7705985	0.82[ASN][1000 genomes]
rs7715317	0.82[ASN][1000 genomes]
rs7720779	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7722251	0.82[ASN][1000 genomes]
rs7724057	0.82[ASN][1000 genomes]
rs878607	0.82[ASN][1000 genomes]
rs991032	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
2	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:36164800-36220800	Weak transcription	Gastric	stomach
6	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
7	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
8	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
10	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
11	chr5:36172400-36189400	Weak transcription	Fetal Intestine Small	intestine
12	chr5:36172400-36189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:36174400-36190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:36175000-36189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:36175000-36191200	Weak transcription	Aorta	Aorta
17	chr5:36175000-36191600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:36175200-36189600	Weak transcription	Spleen	Spleen
19	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
20	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:36175400-36189600	Weak transcription	Lung	lung
22	chr5:36175400-36190600	Weak transcription	Ovary	ovary
23	chr5:36175600-36195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:36177800-36186000	Weak transcription	Brain Germinal Matrix	brain
26	chr5:36179000-36189400	Weak transcription	Thymus	Thymus
27	chr5:36179000-36189600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:36179000-36189600	Weak transcription	Fetal Stomach	stomach
29	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
31	chr5:36179200-36199800	Weak transcription	Colon Smooth Muscle	Colon
32	chr5:36179200-36210400	Weak transcription	Fetal Kidney	kidney
33	chr5:36179200-36212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:36180400-36194800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr5:36180800-36197400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr5:36181200-36195000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr5:36181200-36202600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr5:36181400-36200600	Weak transcription	NHEK	skin
39	chr5:36181400-36212800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr5:36181800-36190200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr5:36181800-36195000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr5:36181800-36195000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr5:36182000-36190600	Weak transcription	Fetal Lung	lung
44	chr5:36182200-36188800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:36182200-36189600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr5:36182200-36190400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr5:36182200-36190600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr5:36182200-36190800	Weak transcription	Fetal Brain Male	brain
49	chr5:36182200-36191600	Weak transcription	Primary B cells from cord blood	blood
50	chr5:36182200-36192600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links