Variant report

Variant	rs3906394
Chromosome Location	chr5:36215845-36215846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10051604	1.00[EUR][1000 genomes]
rs10079844	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10079850	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10473001	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10473002	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10512643	0.88[EUR][1000 genomes]
rs10737962	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10805609	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10805610	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1364017	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs152365	0.86[AFR][1000 genomes]
rs152366	0.83[EUR][1000 genomes]
rs1816101	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2303163	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2362978	1.00[EUR][1000 genomes]
rs27733	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs33663	0.88[EUR][1000 genomes]
rs34888491	0.85[EUR][1000 genomes]
rs3761974	1.00[EUR][1000 genomes]
rs3849786	0.88[EUR][1000 genomes]
rs3860801	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41445147	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4869626	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6451262	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6451263	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6451265	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6451269	1.00[EUR][1000 genomes]
rs6863707	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6866745	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6870255	0.88[AMR][1000 genomes]
rs6873176	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6891120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6893107	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6895423	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7705396	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7715317	1.00[EUR][1000 genomes]
rs7720779	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs991032	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36164800-36220800	Weak transcription	Gastric	stomach
2	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
4	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
8	chr5:36182800-36220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:36182800-36220600	Weak transcription	Brain Angular Gyrus	brain
10	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
11	chr5:36190200-36220800	Weak transcription	Esophagus	oesophagus
12	chr5:36190400-36220800	Weak transcription	Lung	lung
13	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
14	chr5:36191800-36220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:36192000-36224200	Weak transcription	Aorta	Aorta
17	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:36193600-36220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:36193600-36220800	Weak transcription	Pancreas	Pancrea
20	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
21	chr5:36197800-36220800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:36197800-36224800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:36200000-36229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr5:36200200-36220800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:36200200-36239400	Weak transcription	Fetal Brain Male	brain
27	chr5:36201200-36222000	Weak transcription	A549	lung
28	chr5:36201200-36230200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr5:36201400-36240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:36202800-36220800	Weak transcription	Right Ventricle	heart
31	chr5:36203000-36219400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:36203000-36220600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr5:36203600-36219200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:36203600-36220200	Strong transcription	Placenta	Placenta
35	chr5:36203800-36220800	Weak transcription	Brain Substantia Nigra	brain
36	chr5:36203800-36227000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:36204000-36222600	Weak transcription	Fetal Heart	heart
38	chr5:36204000-36227000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:36205200-36226800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:36205800-36221800	Weak transcription	Colon Smooth Muscle	Colon
41	chr5:36206600-36216600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr5:36206600-36219400	Weak transcription	Brain Hippocampus Middle	brain
43	chr5:36207200-36220400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:36207200-36220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:36207400-36217600	Strong transcription	Liver	Liver
46	chr5:36209000-36216200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr5:36209000-36222800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:36210400-36216600	Strong transcription	Fetal Lung	lung
49	chr5:36210400-36223000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:36210400-36223200	Strong transcription	Monocytes-CD14+_RO01746	blood

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