Variant report

Variant	rs6451262
Chromosome Location	chr5:36198990-36198991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36198832..36201320-chr5:36207777..36209368,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10051604	0.88[EUR][1000 genomes]
rs10079844	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10079850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10473001	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10473002	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10512643	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs10737962	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10805609	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10805610	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1364017	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs152365	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs152366	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1816101	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2303163	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2362978	0.88[EUR][1000 genomes]
rs27733	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs33663	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs3761974	0.81[YRI][hapmap];0.88[EUR][1000 genomes]
rs3849786	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs3860801	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3906394	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41445147	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4869626	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6451263	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6451265	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6451269	0.88[EUR][1000 genomes]
rs6863707	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6866745	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6870255	0.92[AMR][1000 genomes]
rs6873176	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6891120	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6893107	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6895423	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7705396	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715317	0.88[EUR][1000 genomes]
rs7720779	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs991032	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
2	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:36164800-36220800	Weak transcription	Gastric	stomach
4	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
5	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
7	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
8	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
12	chr5:36179200-36199800	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:36179200-36210400	Weak transcription	Fetal Kidney	kidney
14	chr5:36179200-36212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:36181200-36202600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:36181400-36200600	Weak transcription	NHEK	skin
17	chr5:36181400-36212800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:36182200-36200800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr5:36182200-36214800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:36182800-36220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:36182800-36220600	Weak transcription	Brain Angular Gyrus	brain
22	chr5:36190000-36200000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr5:36190000-36202600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
25	chr5:36190200-36207400	Strong transcription	Dnd41	blood
26	chr5:36190200-36220800	Weak transcription	Esophagus	oesophagus
27	chr5:36190400-36220800	Weak transcription	Lung	lung
28	chr5:36190600-36211000	Weak transcription	Fetal Stomach	stomach
29	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
30	chr5:36190800-36200800	Strong transcription	Hela-S3	cervix
31	chr5:36190800-36202800	Strong transcription	HSMM	muscle
32	chr5:36190800-36206200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr5:36190800-36211000	Weak transcription	Fetal Intestine Small	intestine
34	chr5:36191000-36199600	Weak transcription	Fetal Brain Male	brain
35	chr5:36191400-36201000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:36191400-36203000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr5:36191800-36202400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:36191800-36220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:36192000-36200600	Weak transcription	Ovary	ovary
41	chr5:36192000-36202600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:36192000-36206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:36192000-36224200	Weak transcription	Aorta	Aorta
44	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr5:36193400-36201200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr5:36193600-36220800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr5:36193600-36220800	Weak transcription	Pancreas	Pancrea
48	chr5:36193800-36199000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr5:36193800-36201000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:36193800-36201200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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