Variant report

Variant	rs152396
Chromosome Location	chr5:115115488-115115489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115113442..115116376-chr5:115135444..115138235,2	MCF-7	breast:
2	chr5:115109021..115111170-chr5:115113297..115115929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222598	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs152417	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs154762	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs154764	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs154765	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs154766	0.88[EUR][1000 genomes]
rs154767	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs154768	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs154769	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs154772	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs154773	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs154776	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs154777	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs166075	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs171613	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs171661	0.91[CHB][hapmap];0.87[CHD][hapmap]
rs183769	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs185119	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs185120	0.82[EUR][1000 genomes]
rs249485	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs249486	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs249487	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs258735	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs372867	0.84[EUR][1000 genomes]
rs450917	0.88[EUR][1000 genomes]
rs71186	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1024641	chr5:115030110-115123474	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1021139	chr5:115036724-115131280	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv882734	chr5:115112928-115130906	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115091800-115117200	Weak transcription	Liver	Liver
2	chr5:115110800-115117400	Weak transcription	Ovary	ovary

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