Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115083059..115085192-chr5:115085470..115087199,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs152396	0.88[EUR][1000 genomes]
rs152417	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154764	0.85[EUR][1000 genomes]
rs154765	0.89[EUR][1000 genomes]
rs154766	0.91[EUR][1000 genomes]
rs154767	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154768	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154769	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154772	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs154773	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154776	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154777	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs166075	0.83[EUR][1000 genomes]
rs171613	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs183769	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs185119	0.83[EUR][1000 genomes]
rs249485	0.84[EUR][1000 genomes]
rs249486	0.84[EUR][1000 genomes]
rs249487	0.85[EUR][1000 genomes]
rs258735	0.86[EUR][1000 genomes]
rs372867	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1024641	chr5:115030110-115123474	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1021139	chr5:115036724-115131280	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115084200-115090400	Weak transcription	Liver	Liver
2	chr5:115085800-115087400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:115085800-115087400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:115086600-115087400	Enhancers	HUES64 Cell Line	embryonic stem cell

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