Variant report
| Variant | rs372867 |
|---|---|
| Chromosome Location | chr5:115085606-115085607 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:115083059..115085192-chr5:115085470..115087199,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs152396 | 0.90[GIH][hapmap];0.84[EUR][1000 genomes] |
| rs152417 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs154764 | 0.84[EUR][1000 genomes] |
| rs154765 | 0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes] |
| rs154766 | 0.88[EUR][1000 genomes] |
| rs154767 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs154768 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs154769 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs154772 | 0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs154773 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs154776 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs154777 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs154783 | 0.91[CHB][hapmap] |
| rs166075 | 0.80[EUR][1000 genomes] |
| rs171613 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs183769 | 0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs185119 | 0.80[EUR][1000 genomes] |
| rs249485 | 0.80[EUR][1000 genomes] |
| rs249486 | 0.81[EUR][1000 genomes] |
| rs249487 | 0.82[EUR][1000 genomes] |
| rs258735 | 0.82[EUR][1000 genomes] |
| rs450917 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916273 | chr5:114656592-115089901 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv868915 | chr5:114723371-115252527 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024641 | chr5:115030110-115123474 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv1021139 | chr5:115036724-115131280 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:115073600-115086200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr5:115084200-115090400 | Weak transcription | Liver | Liver |
