Variant report

Variant	rs1525805
Chromosome Location	chr7:112782440-112782441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:112782407-112782673	GM12878	blood:	n/a	n/a
2	MYC	chr7:112782417-112783233	NB4	blood:	n/a	chr7:112783141-112783150 chr7:112782669-112782679
3	RCOR1	chr7:112782334-112783153	K562	blood:	n/a	n/a
4	SPI1	chr7:112782295-112783311	HL-60	blood:	n/a	n/a
5	JUND	chr7:112782245-112783261	K562	blood:	n/a	chr7:112782883-112782892
6	BHLHE40	chr7:112782355-112783105	K562	blood:	n/a	n/a
7	CBX3	chr7:112782238-112783194	K562	blood:	n/a	n/a
8	RUNX3	chr7:112782412-112782706	GM12878	blood:	n/a	n/a
9	JUN	chr7:112782257-112783241	K562	blood:	n/a	chr7:112782883-112782892
10	RCOR1	chr7:112782189-112783137	K562	blood:	n/a	n/a
11	IRF4	chr7:112782338-112782751	GM12878	blood:	n/a	n/a
12	MYC	chr7:112782059-112783115	K562	blood:	n/a	chr7:112782669-112782679
13	SP1	chr7:112782350-112782788	K562	blood:	n/a	n/a
14	EP300	chr7:112782164-112783141	K562	blood:	n/a	n/a
15	MAFF	chr7:112782282-112783091	K562	blood:	n/a	n/a
16	PML	chr7:112782292-112782902	K562	blood:	n/a	n/a
17	SPI1	chr7:112782275-112783081	GM12878	blood:	n/a	n/a
18	TRIM28	chr7:112782258-112783117	K562	blood:	n/a	n/a
19	TBL1XR1	chr7:112782216-112783261	K562	blood:	n/a	n/a
20	EP300	chr7:112782361-112782771	GM12878	blood:	n/a	n/a
21	KAP1	chr7:112782371-112782889	K562	blood:	n/a	n/a
22	SPI1	chr7:112782263-112782852	GM12891	blood:	n/a	n/a
23	CEBPB	chr7:112782303-112783328	K562	blood:	n/a	chr7:112782768-112782780 chr7:112783141-112783152 chr7:112783086-112783097
24	ZMIZ1	chr7:112782314-112783079	K562	blood:	n/a	n/a
25	GATA2	chr7:112782294-112782888	K562	blood:	n/a	n/a
26	NFIC	chr7:112782290-112782706	GM12878	blood:	n/a	n/a
27	EP300	chr7:112782403-112782798	GM12878	blood:	n/a	n/a
28	ELF1	chr7:112782426-112782805	K562	blood:	n/a	chr7:112782574-112782587
29	ATF1	chr7:112782341-112783153	K562	blood:	n/a	n/a
30	GATA2	chr7:112782289-112782826	K562	blood:	n/a	n/a
31	SPI1	chr7:112782389-112782767	K562	blood:	n/a	n/a
32	MAX	chr7:112781987-112783223	NB4	blood:	n/a	chr7:112783141-112783150 chr7:112782669-112782679
33	NR2F2	chr7:112781880-112783104	K562	blood:	n/a	n/a
34	ZNF274	chr7:112782079-112783050	K562	blood:	n/a	n/a
35	POLR2A	chr7:112782405-112782726	K562	blood:	n/a	n/a
36	IRF1	chr7:112782044-112783223	K562	blood:	n/a	n/a
37	CTCF	chr7:112782334-112783013	K562	blood:	n/a	n/a
38	RUNX3	chr7:112782362-112782710	GM12878	blood:	n/a	n/a
39	ARID3A	chr7:112782280-112783198	K562	blood:	n/a	n/a
40	MAZ	chr7:112782380-112782927	K562	blood:	n/a	n/a
41	TBP	chr7:112782378-112783107	K562	blood:	n/a	n/a
42	CEBPD	chr7:112782235-112782879	K562	blood:	n/a	n/a
43	POLR2A	chr7:112782390-112782804	HL-60	blood:	n/a	n/a
44	STAT5A	chr7:112782318-112782856	K562	blood:	n/a	n/a
45	SPI1	chr7:112782377-112782884	HL-60	blood:	n/a	n/a
46	CEBPD	chr7:112782245-112782837	K562	blood:	n/a	n/a
47	HMGN3	chr7:112782387-112782661	K562	blood:	n/a	n/a
48	CEBPB	chr7:112782370-112783347	K562	blood:	n/a	chr7:112782768-112782780 chr7:112783141-112783152 chr7:112783086-112783097
49	TBL1XR1	chr7:112782434-112782747	K562	blood:	n/a	n/a
50	SPI1	chr7:112782353-112782784	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:112756695..112758581-chr7:112781055..112783118,2	K562	blood:
2	chr7:112766932..112769724-chr7:112781846..112784027,2	K562	blood:
3	chr7:112778989..112780490-chr7:112780963..112783093,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225457	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34814330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3355135	chr7:112616979-113134651	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv435847	chr7:112618576-113134022	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3430638	chr7:112620663-113134403	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3442221	chr7:112620665-113134971	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv993501	chr7:112625029-113125338	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1022066	chr7:112630168-113122748	Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv539090	chr7:112630168-113122748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv889059	chr7:112755548-112908788	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv889060	chr7:112766082-112994137	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112779400-112785800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:112781400-112783400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:112781800-112786200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:112782000-112782800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:112782000-112783000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:112782000-112784400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:112782200-112782800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:112782200-112783000	Enhancers	Fetal Brain Female	brain
9	chr7:112782200-112783200	Enhancers	Primary B cells from peripheral blood	blood
10	chr7:112782200-112783200	Flanking Active TSS	K562	blood
11	chr7:112782200-112783800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr7:112782400-112782800	Enhancers	Brain Anterior Caudate	brain

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