Variant report

Variant rs1530631
Chromosome Location chr2:46590334-46590335
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:46568000-46596600 Weak transcription Colon Smooth Muscle Colon
2 chr2:46572600-46590600 Strong transcription NHEK skin
3 chr2:46573200-46613000 Strong transcription Hela-S3 cervix
4 chr2:46573800-46591400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr2:46574200-46590600 Strong transcription Placenta Amnion Placenta Amnion
6 chr2:46574400-46590400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr2:46574600-46607200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr2:46574800-46613000 Weak transcription HSMM muscle
9 chr2:46578600-46590400 Strong transcription Breast Myoepithelial Primary Cells Breast
10 chr2:46578800-46590800 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr2:46580000-46594600 Weak transcription Psoas Muscle Psoas
12 chr2:46580600-46597200 Weak transcription Fetal Heart heart
13 chr2:46581200-46597000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr2:46583000-46590400 Strong transcription Rectal Mucosa Donor 29 rectum
15 chr2:46583000-46591000 Weak transcription Fetal Kidney kidney
16 chr2:46583000-46591000 Strong transcription Ovary ovary
17 chr2:46583200-46591000 Strong transcription Gastric stomach
18 chr2:46584400-46591000 Weak transcription K562 blood
19 chr2:46585000-46593200 Weak transcription Brain Hippocampus Middle brain
20 chr2:46585200-46594600 Weak transcription Brain Cingulate Gyrus brain
21 chr2:46585400-46592000 Weak transcription Brain Substantia Nigra brain
22 chr2:46585400-46593200 Weak transcription Brain Inferior Temporal Lobe brain
23 chr2:46585400-46594000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr2:46585600-46592600 Weak transcription Brain Anterior Caudate brain
25 chr2:46585600-46593200 Weak transcription Brain Angular Gyrus brain
26 chr2:46586200-46591200 Strong transcription HepG2 liver
27 chr2:46586600-46604000 Weak transcription HSMMtube muscle
28 chr2:46587200-46591000 Strong transcription Aorta Aorta
29 chr2:46587400-46590400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr2:46587400-46590600 Genic enhancers Left Ventricle heart
31 chr2:46587400-46591000 Strong transcription Fetal Stomach stomach
32 chr2:46587400-46591200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr2:46587600-46591200 Weak transcription Fetal Muscle Leg muscle
34 chr2:46587800-46591600 Strong transcription HMEC breast
35 chr2:46588400-46591000 Strong transcription Pancreas Pancrea
36 chr2:46588600-46591400 Enhancers Primary hematopoietic stem cells short term culture blood
37 chr2:46588600-46591400 Genic enhancers NHLF lung
38 chr2:46588600-46604800 Weak transcription Stomach Mucosa stomach
39 chr2:46588800-46596800 Weak transcription Stomach Smooth Muscle stomach
40 chr2:46588800-46597200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr2:46588800-46598800 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr2:46589000-46590600 Enhancers Primary Natural Killer cells fromperipheralblood blood
43 chr2:46589000-46591400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr2:46589000-46592200 Enhancers Primary T helper naive cells fromperipheralblood blood
45 chr2:46589000-46592600 Enhancers Primary T cells from cord blood blood
46 chr2:46589000-46594800 Genic enhancers Liver Liver
47 chr2:46589200-46591000 Enhancers Primary T helper cells fromperipheralblood blood
48 chr2:46589200-46592200 Enhancers Primary T killer naive cells fromperipheralblood blood
49 chr2:46589200-46593000 Genic enhancers Adipose Nuclei Adipose
50 chr2:46589200-46596200 Weak transcription Skeletal Muscle Female skeletal muscle

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