Variant report

Variant rs1562453
Chromosome Location chr2:46580474-46580475
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:46567400-46584600 Weak transcription Brain Inferior Temporal Lobe brain
2 chr2:46568000-46596600 Weak transcription Colon Smooth Muscle Colon
3 chr2:46570200-46584800 Weak transcription Small Intestine intestine
4 chr2:46572000-46584600 Weak transcription Brain Hippocampus Middle brain
5 chr2:46572400-46583200 Weak transcription Muscle Satellite Cultured Cells --
6 chr2:46572600-46590600 Strong transcription NHEK skin
7 chr2:46573200-46584200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr2:46573200-46613000 Strong transcription Hela-S3 cervix
9 chr2:46573400-46583000 Weak transcription Ovary ovary
10 chr2:46573600-46583600 Weak transcription Stomach Mucosa stomach
11 chr2:46573800-46591400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr2:46574000-46586200 Strong transcription Sigmoid Colon Sigmoid Colon
13 chr2:46574000-46589200 Strong transcription Osteobl bone
14 chr2:46574000-46589600 Strong transcription A549 lung
15 chr2:46574200-46589600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr2:46574200-46590600 Strong transcription Placenta Amnion Placenta Amnion
17 chr2:46574400-46587400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr2:46574400-46590400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr2:46574600-46607200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr2:46574800-46613000 Weak transcription HSMM muscle
21 chr2:46575400-46581800 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr2:46575600-46583800 Weak transcription HSMMtube muscle
23 chr2:46575600-46584400 Weak transcription Brain Substantia Nigra brain
24 chr2:46576600-46581600 Weak transcription Gastric stomach
25 chr2:46576600-46583000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr2:46576600-46583400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr2:46576600-46585200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr2:46577000-46583600 Strong transcription HepG2 liver
29 chr2:46577600-46582000 Enhancers Right Atrium heart
30 chr2:46577800-46582000 Genic enhancers Placenta Placenta
31 chr2:46578200-46580600 Genic enhancers Fetal Adrenal Gland Adrenal Gland
32 chr2:46578400-46583600 Weak transcription Fetal Intestine Large intestine
33 chr2:46578400-46585600 Genic enhancers Left Ventricle heart
34 chr2:46578600-46582000 Strong transcription Fetal Stomach stomach
35 chr2:46578600-46590400 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr2:46578800-46581000 Enhancers Right Ventricle heart
37 chr2:46578800-46590800 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr2:46579000-46582200 Genic enhancers Lung lung
39 chr2:46579000-46585600 Strong transcription Fetal Intestine Small intestine
40 chr2:46579200-46580600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr2:46579400-46581000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr2:46579400-46581000 Enhancers Thymus Thymus
43 chr2:46579400-46581400 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr2:46579400-46581400 Enhancers Primary T killer naive cells fromperipheralblood blood
45 chr2:46579400-46588000 Weak transcription Rectal Smooth Muscle rectum
46 chr2:46579600-46580600 Genic enhancers HUVEC blood vessel
47 chr2:46579600-46581000 Enhancers Primary T regulatory cells fromperipheralblood blood
48 chr2:46579600-46581200 Enhancers Primary T cells fromperipheralblood blood
49 chr2:46579600-46581400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
50 chr2:46579600-46581400 Enhancers Primary T helper cells PMA-I stimulated --

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