Variant report

Variant rs4953356
Chromosome Location chr2:46578924-46578925
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:46563800-46579000 Weak transcription Rectal Smooth Muscle rectum
2 chr2:46566600-46579200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:46567400-46584600 Weak transcription Brain Inferior Temporal Lobe brain
4 chr2:46568000-46596600 Weak transcription Colon Smooth Muscle Colon
5 chr2:46570200-46584800 Weak transcription Small Intestine intestine
6 chr2:46572000-46584600 Weak transcription Brain Hippocampus Middle brain
7 chr2:46572400-46583200 Weak transcription Muscle Satellite Cultured Cells --
8 chr2:46572600-46590600 Strong transcription NHEK skin
9 chr2:46573200-46584200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr2:46573200-46613000 Strong transcription Hela-S3 cervix
11 chr2:46573400-46583000 Weak transcription Ovary ovary
12 chr2:46573600-46583600 Weak transcription Stomach Mucosa stomach
13 chr2:46573800-46591400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:46574000-46586200 Strong transcription Sigmoid Colon Sigmoid Colon
15 chr2:46574000-46589200 Strong transcription Osteobl bone
16 chr2:46574000-46589600 Strong transcription A549 lung
17 chr2:46574200-46589600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr2:46574200-46590600 Strong transcription Placenta Amnion Placenta Amnion
19 chr2:46574400-46579600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr2:46574400-46580000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr2:46574400-46587400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr2:46574400-46590400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr2:46574600-46607200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr2:46574800-46613000 Weak transcription HSMM muscle
25 chr2:46575400-46581800 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr2:46575600-46579800 Weak transcription Fetal Heart heart
27 chr2:46575600-46583800 Weak transcription HSMMtube muscle
28 chr2:46575600-46584400 Weak transcription Brain Substantia Nigra brain
29 chr2:46576000-46579400 Weak transcription HMEC breast
30 chr2:46576200-46579800 Strong transcription Aorta Aorta
31 chr2:46576400-46579200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
32 chr2:46576600-46579400 Weak transcription Esophagus oesophagus
33 chr2:46576600-46580200 Strong transcription Pancreas Pancrea
34 chr2:46576600-46581600 Weak transcription Gastric stomach
35 chr2:46576600-46583000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr2:46576600-46583400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr2:46576600-46585200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr2:46576800-46579000 Weak transcription Fetal Intestine Small intestine
39 chr2:46576800-46579200 Weak transcription Psoas Muscle Psoas
40 chr2:46576800-46579400 Strong transcription Liver Liver
41 chr2:46577000-46583600 Strong transcription HepG2 liver
42 chr2:46577200-46579600 Flanking Active TSS Primary T cells from cord blood blood
43 chr2:46577400-46579000 Strong transcription NHDF-Ad bronchial
44 chr2:46577400-46579600 Enhancers Primary neutrophils fromperipheralblood blood
45 chr2:46577400-46579800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr2:46577600-46579600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
47 chr2:46577600-46579600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
48 chr2:46577600-46579800 Enhancers Brain Anterior Caudate brain
49 chr2:46577600-46580200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
50 chr2:46577600-46582000 Enhancers Right Atrium heart

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