Variant report

Variant	rs1532803
Chromosome Location	chr9:73903664-73903665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11142777	0.80[EUR][1000 genomes]
rs11142778	0.80[EUR][1000 genomes]
rs11142779	0.82[EUR][1000 genomes]
rs11142780	0.82[EUR][1000 genomes]
rs11142781	0.82[EUR][1000 genomes]
rs12005903	0.88[ASN][1000 genomes]
rs13285637	0.82[ASN][1000 genomes]
rs13286390	0.84[ASN][1000 genomes]
rs13295758	0.84[ASN][1000 genomes]
rs1394308	0.81[ASN][1000 genomes]
rs1504388	0.85[EUR][1000 genomes]
rs1504389	0.85[EUR][1000 genomes]
rs1504390	0.86[EUR][1000 genomes]
rs1504391	0.86[EUR][1000 genomes]
rs1504392	0.86[EUR][1000 genomes]
rs1532801	0.86[EUR][1000 genomes]
rs1532802	0.86[EUR][1000 genomes]
rs1532804	0.86[EUR][1000 genomes]
rs2309916	0.85[EUR][1000 genomes]
rs2309917	0.80[EUR][1000 genomes]
rs4370599	0.85[EUR][1000 genomes]
rs7854181	0.86[EUR][1000 genomes]
rs7854330	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614605	chr9:73887092-73915883	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471311	chr9:73902148-73916953	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73901600-73906800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:73903400-73903800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr9:73903400-73904000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:73903600-73903800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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