Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10120526	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11142739	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12005903	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12344424	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12344482	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12345212	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12551555	1.00[TSI][hapmap]
rs12553005	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13285314	0.90[EUR][1000 genomes]
rs13286390	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13290512	0.90[EUR][1000 genomes]
rs13295758	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1394308	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1532803	0.82[ASN][1000 genomes]
rs17056555	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34984694	0.90[EUR][1000 genomes]
rs35090567	0.90[EUR][1000 genomes]
rs35748852	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4084580	0.85[EUR][1000 genomes]
rs7862138	0.90[EUR][1000 genomes]
rs7871760	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7873451	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614605	chr9:73887092-73915883	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471311	chr9:73902148-73916953	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73901400-73903400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:73901600-73903400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:73901600-73906800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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